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Sync your payroll to QuickBooks Online

using Paychex General Ledger Service

With Paychex General Ledger Service, you can save time and reduce data-entry errors by posting payroll entries to your QuickBooks® Online accounting software. Our integration is fast, easy, and secure.

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  • Real-time synchronization

    from Paychex to QuickBooks Online when your payroll is released.



  • Automatic GL posting to QuickBooks Online dimensions

    accounts, employees, organizations, and classes.



  • Ability to help protect data integrity

    by identifying unlinked categories and quickly sending data from Paychex to QuickBooks Online.



  • Consultation

    We’ll work together to ensure that your business’ digital identity best represents your hard work. FreshLime consultants will review responsiveness, online reviews, and overall visibility.



  • Consultation

    We’ll work together to ensure that your business’ digital identity best represents your hard work. FreshLime consultants will review responsiveness, online reviews, and overall visibility.



  • Consultation

    We’ll work together to ensure that your business’ digital identity best represents your hard work. FreshLime consultants will review responsiveness, online reviews, and overall visibility.



  • Consultation

    We’ll work together to ensure that your business’ digital identity best represents your hard work. FreshLime consultants will review responsiveness, online reviews, and overall visibility.



  • Consultation

    We’ll work together to ensure that your business’ digital identity best represents your hard work. FreshLime consultants will review responsiveness, online reviews, and overall visibility.


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General Ledger Client Setup

If you are a Paychex Flex General Ledger client and want to sync your payroll with QuickBooks, first confirm that Paychex has set up your GL for data sync. Next, authorize the synchronization of data between QuickBooks Online and GL by completing these steps:

  1. Select General Ledger from the left navigation menu in Paychex Flex.
  2. Select Preferences.
  3. Select Export File from the Preferences drop-down menu.
  4. Select QuickBooks® Online, then select Authorize QuickBooks Connection.
  5. Enter your login information into QuickBooks in the new browser window and select Login.
  6. Select Allow access.

Connect your payroll with QuickBooks Online today for free. Please refer to this learning aid for full setup instructions.

“I like that I don’t have to enter all that payroll. It just comes in and it’s right there. It’s so nice. That’s a big time-saver.”Barb Kapinos, bookkeeper, Boyd Andrew Management Services in Montana

What is the size of your company?

1 - 9 Employees 10 - 49 Employees 50 - +10,000 Employees